Regulated Operon: xtmAB-xkdEFGHIJKM

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
xtmA ykxF + 1325096..1325893
COG3728L  
xtmB ykxG + 1325890..1327191
COG1783R  
xkdE
+ 1327195..1328682
COG5518R  
xkdF
+ 1328702..1329529

 
xkdG
+ 1329555..1330490

xkdG-BAC  
xkdH
+ 1330892..1331248

 
xkdI
+ 1331245..1331730

 
xkdJ
+ 1331743..1332183

 
xkdK
+ 1332402..1333802

 
xkdM
+ 1333804..1334247

 

Operon evidence: Genome analysis
Reference: Wood HE, et al. (1990)
Comments: Wood et al. assume an operon of at least 19 kb, presumably including the downstream genes xkdNOPQRSTUVWX-xepA-xhlAB-xlyA


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Xpf Positive ND ND ND McDonnell GE, et al. (1994): DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ATACGCAGACCTTTCTCAGAAAGGTCTGTTTTTTAAAGATGAA
     >>>>>>>>>>   <<<<<<<<<<
1334271..1334293
24..46
-15.6
xkdM

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai