Regulated Operon: yngABC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yngA
+ 1946249..1946695
COG2246S  
yngB
+ 1946702..1947595
COG1210M  
yngC
+ 1947668..1948264
COG0586S yngC-BAC  

Operon evidence: Co-regulated by YclJ, Genome analysis
Reference: Ogura M, et al. (2010)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YclJ Positive -71:-16 1946167..1946222 ATACCCGCTTTTTCATGTTTTGTTCATATTTTATTAATTGTTTATTCAACACTGTC Ogura M, et al. (2010): OV GS FT
SigA Promoter -50:+10 1946188..1946247 GTTCATATTTTATTAATTGTTTATTCAACACTGTCCGCTATAGTAATCCATATCAACAAA Ogura M, et al. (2010): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GATAGCTAGCGGATATGCATAGGGGTGACTGACGCTCCCCTATGCATATTTTTTTACTTGCGA
             >>>>>>>>>>>>>>     <<<<<<<<<<<<<<<<
1948273..1948307
9..43
-21.6
yngC

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai