TAXONOMY


phylum color No. of species
Actinobacteria orange 10
Chlamydiae yellow 6
Cyanobacteria green 3
Firmicutes red
32
Proteobacteria blue 47
Spirochaetes purple 3
othres gray 6
TOTAL
107
mark meaning
E It doesn't have orthologous gene.
{ It has orthologous gene.
It has orthologous gene and cis-element like sequence at the promoter region.

phylum order species KEGG COG
Actinobacteria Actinobacteridae Bifidobacterium longum NCC2705 blo
Corynebacterium glutamicum ATCC 13032 cgl Cgl
Corynebacterium efficiens YS-314 cef
Mycobacterium leprae TN mle Mle
Mycobacterium tuberculosis CDC1551, clinical strain mtc MtC
Mycobacterium tuberculosis H37Rv, laboratory strain mtu Mtu
Streptomyces coelicolor A3(2) sco
Streptomyces avermitilis sma
Tropheryma Tropheryma whipplei Twist twh
Tropheryma whipplei TW08/27 tws
Aquificae Aquificales Aquifex aeolicus VF5 aae Aae
Bacteroidetes Bacteroides (class) Bacteroides thetaiotaomicron VPI-5482 bth
Chlamydiae Chlamydiales Chlamydia muridarum (Chlamydia trachomatis MoPn) cmu
Chlamydia trachomatis serovar D ctr Ctr
Chlamydophila caviae GPIC cca
Chlamydophila pneumoniae AR39 cpa
Chlamydophila pneumoniae CWL029 cpn Cpn
Chlamydophila pneumoniae J138 cpj
Chlorobi Chlorobia Chlorobium tepidum TLS cte
Cyanobacteria Chroococcales Synechocystis sp. PCC 6803 syn Syn
Thermosynechococcus elongatus BP-1 tel
Nostocales Anabaena sp. PCC 7120 (Nostoc sp. PCC 7120) ana Nos
Deinococcus-Thermus Deinococci Deinococcus radiodurans R1 dra Dra
Firmicutes Bacillales Bacillus anthracis Ames ban
Bacillus cereus ATCC 14579 bce
Bacillus halodurans C-125 bha Bha
Bacillus subtilis 168 bsu Bsu
Listeria innocua CLIP 11262 lin Lin
Listeria monocytogenes EGD-e lmo
Oceanobacillus iheyensis HTE831 oih
Staphylococcus aureus MW2 sam Sau
Staphylococcus aureus Mu50, MRSA strain with vancomycin resistance sav
Staphylococcus aureus N315, meticillin-resistant (MRSA) sau
Staphylococcus epidermidis ATCC 12228 sep
Clostridia Clostridium acetobutylicum ATCC 824 cac Cac
Clostridium perfringens 13 cpe
Clostridium tetani E88 ctc
Thermoanaerobacter tengcongensis MB4T tte
Lactobacillales Enterococcus faecalis V583 (vancomycin-resistant clinical isolate) efa
Lactobacillus plantarum WCFS1 lpl
Lactococcus lactis subsp. lactis IL1403 lla Lla
Streptococcus agalactiae 2603 (serotype V) sag
Streptococcus agalactiae NEM316 san
Streptococcus mutans UA159 (serotypeC) smu
Streptococcus pneumoniae R6 spr
Streptococcus pneumoniae TIGR4 spn Spn
Streptococcus pyogenes SF370 (serotyp M1) spy Spy
Streptococcus pyogenes MGAS315 (serotype M3) spg
Streptococcus pyogenes MGAS8232 (serotype M18) spm
Streptococcus pyogenes SSI-1 sps
Mollicutes Mycoplasma genitalium G-37 mge Mge
Mycoplasma penetrans HF-2 mpe
Mycoplasma pneumoniae M129 mpn Mpn
Mycoplasma pulmonis UAB CTIP mpu Mpu
Ureaplasma urealyticum serovar 3 uur Uur
Fusobacteria Fusobacterales Fusobacterium nucleatum ATCC 25586 fnu Fnu
Proteobacteria Alphaproteobacteria Agrobacterium tumefaciens C58 (Cereon) atc Atu
Agrobacterium tumefaciens C58 (U.Washington/Dupont) atu
Bradyrhizobium japonicum USDA110 bja
Brucella melitensis 16M bme Bme
Brucella suis 1330 bms
Caulobacter crescentus CB15 ccr Ccr
Mesorhizobium loti MAFF303099 mlo Mlo
Rickettsia conorii Malish 7 rco Rco
Rickettsia prowazekii Madrid E rpr Rpr
Sinorhizobium meliloti 1021 sme Sme
Betaproteobacteria Neisseria meningitidis MC58 (serogroup B) nme Nme
Neisseria meningitidis Z2491 (serogroup A) nma NmA
Nitrosomonas europaea ATCC 19718 neu
Ralstonia solanacearum GMI1000 rso Rso
Epsilonproteobacteria Campylobacter jejuni NCTC11168 cje Cje
Helicobacter pylori 26695 hpy Hpy
Helicobacter pylori J99 hpj jHp
Gammaproteobacteria Escherichia coli K-12 W3110 ecj
Buchnera aphidicola Bp (symbiont of Baizongia pistaciae) bab
Buchnera aphidicola Sg (symbiont of Schizaphis graminum) bas
Buchnera sp. APS (symbiont of Acyrthosiphon pisum) buc Buc
Coxiella burnetii RSA 493 cbu
Escherichia coli CFT073 ecc
Escherichia coli K-12 MG1655 eco Eco
Escherichia coli O157:H7 Sakai ecs Ecs
Escherichia coli O157:H7 EDL933 ece EcZ
Haemophilus influenzae Rd KW20 hin Hin
Pasteurella multocida PM70 pmu Pmu
Pseudomonas aeruginosa PA01 pae Pae
Pseudomonas putida KT2440 ppu
Pseudomonas syringae pv. tomato DC3000 pst
Salmonella typhi CT18 sty Sty
Salmonella typhi Ty2 stt
Salmonella typhimurium LT2 stm
Shewanella oneidensis MR-1 son
Shigella flexneri 301 (serotype 2a) sfl
Shigella flexneri 2457T (serotype 2a) sfx
Vibrio cholerae El Tor N16961 vch Vch
Vibrio parahaemolyticus RIMD 2210633 vpa
Vibrio vulnificus CMCP6 vvu
Wigglesworthia brevipalpis wbr
Xanthomonas campestris pv. campestris ATCC 33913 xcc
Xanthomonas axonopodis pv. citri 306 xac
Xylella fastidiosa 9a5c xfa Xfa
Xylella fastidiosa Temecula1 xft
Yersinia pestis CO92 ype Ype
Yersinia pestis KIM ypk
Spirochaetes Spirochaetales Borrelia burgdorferi B31 bbu Bbu
Leptospira interrogans 56601 (serovarlai) lil
Treponema pallidum Nichols tpa Tpa
Thermotogae Thermotogales Thermotoga maritima MSB8 tma Tma




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 2000-2008
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