Similar regions between promoters of bmrU

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GACGAGCGTCGTTCCTTTTTTCGTAAGTGCCTCATCCACCTCTTCGGCTGTTTTAAGCTC hal ..........GTTTATTTTATAGAAAGT........CAGCTTTTCACCTGCTTT--GCAT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<< sub GGTGTATCCGGCAGCTGTTATTTCTTGTCTCGCTTG--GCGGACAATATCATTCATAAAT hal GGTTTTTTTAGAGGCTGGTA........CTCGCTTGCCGCGGGCAA.............. -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<< sub AAATTAAAGTCCATGTTCAATGAAGACCTCTCCTTTTTCATCATCTGTTCTTATGATAGC hal .......................................AACAGGTGTTTATTTTATAGA -180 -170 -160 -150 -140 -130 sub AAGGAAACGTCCATATCGGCAAATGACTTTGCTTCGCCGTGCACTTTTTTTGGCCTCTTC hal AAG......................................................... -120 -110 -100 -90 -80 -70 sub GTTTACTGCTTACAGAAAAAGGGGATTATATAACCAGAAGGAAAATAAAGGAGCAGTTGT hal .......GCTTCCGCTAATTGGGGGTTTTAT............................. -60 -50 -40 -30 -20 -10 sub AT hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...