Similar regions between promoters of citB

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AGCCGGCGCCTTTGCCTTGGCTTTTTGCGTCATTCATTCCGTTAATGACGTGATTCGCTT ste ............TTCCTTGGGCTTTGGCGGCGTTCATGCCAGGGATTACGTGGTTTGCTT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<< sub TTCTTTTGACCATCATTATCACCTCAATCATAATATGG--CTTCTTTTATTGTGTTATAT ste TTCGCTTTGCCATTCGTTTCACCTCAATCATTATTTACAACTTGTCCTGTTCTATAATAA -240 -230 -220 -210 -200 -190 @@@@@@@@@@@@@@@ sub GAGAGAGCGTAAACAGTAAAAATTACCGGTACATTTTTCTCATAAGTCGAACTTATTGTA ste GATAAAG..........................................AACTTGTCCTG -180 -170 -160 -150 -140 -130 sub TTTAATAAAAACATTGATATTTACTTAT-GTATGATTTTGTTTTAATATGAAATTGTGAG ste TTCTATAATAAGAT...TATTTACAACTTGTCCTGTTCTATAATAAGATAAAGTCGTGCC -120 -110 -100 -90 -80 -70 sub AAAATTGTGATGGAATGTAATGTTCATCTGAGAATGATCTGATCTGAAGGGGGATTTTGG ste GAACTTTATGGGGATTG....................TGTGAAGTGAAGGGGGTTAT... -60 -50 -40 -30 -20 -10 sub AGA ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...