Similar regions between promoters of cspD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATCCTGAAGGAATCAGAAATGATGACCGCCAAACAAAAAGCCAAAGTGCTATCGTAATG ste ......GAAGGA-TCGAACAAGATATTCAACGGACAAAAAGCCAATG-GCTCTCGTCCTG -300 -290 -280 -270 -260 -250 ]]]]]]]]]]]]]]]]]]]]]]] sub GCGTACTTGAGAGCATACGAAAATCGTGTGCTCTTTTTATTTATATTCAGCCATCAATAA ste CGGCGATGGAGGG..................TCTTTTTATCTATATTCAACGGACAAAAA -240 -230 -220 -210 -200 -190 sub AAGCGGTTA-CATTTTTTTATGGAACTTGCCCTTCTTTTGAAAAATAAGCCGTTTCGCAA ste TGGCTAAAATCATCTTTTTAT................................TCCGGAG -180 -170 -160 -150 -140 -130 sub CTTGACGGGTGCTCCCAGATGGTGTATAGTTGAACCATCATTTAACAATGAATCAAAGTT ste CTGTACGGGGGATGGGACATTGT..................................... -120 -110 -100 -90 -80 -70 sub AGATGATGACAAAATTTTTTTTAGCACATGGGTGCTACAGTACTAGGAGGAATTAAGCAA ste .GACGATGAGAAGA....TTTTCGCCAATGGCT....CAGCACCCCGAGGAGTT...... -60 -50 -40 -30 -20 -10 sub T ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...