Similar regions between promoters of glcR


                                                                      
          >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
sub       ACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACCCCGGG
hal       .........................TGGCTTTTTTTATGTTATGGACAGAAAA.......
       -300      -290      -280      -270      -260      -250         


                                                                      
          >>>>>>>>>>>>>>>>>                                           
sub       AAAAAGCTGCTGATTGACACCCCTGCTCCTCCCGTTATCTATCCATTCACTATTATCCGG
hal       ....................................ATCTTTCCCAACGCTATCATACGC
       -240      -230      -220      -210      -200      -190         


                                                                      
                                                                      
sub       ATCTTCGCATCATCCCCTCAAAATTGACCAGTCGACCAGACTGGTTCTTTCTTTTTGCCT
hal       ATCGTCCCATCCTCACATCAAA........................CTTTTTTTATGTTA
       -180      -170      -160      -150      -140      -130         


                                                                      
                                                                      
sub       ACTTAGGAAAAATTGGTTCTCTCGACGCATTTTTACTTAAAATCACTTATTAATGTTGAA
hal       TGGACAGAAAAAATATTTATTTTGAAAAATACATAAGCAAAA-CACGCAAACACCTTGCT
       -120      -110      -100       -90       -80       -70         


                                                                      
                                                                      
sub       TAAAAT-CAAATAAAAACTTATAATTACTTATAAATGATTGCTGAGAAAAGGAATGAGGG
hal       TAAATCGCGCAACATCACTTATAATTACTTATAA..........................
        -60        -50       -40       -30       -20       -10        


           
           
sub       C
hal       .
         -1


   >     : other CDS		-     : gaps within a similar region
   ]     : terminator		.     : gaps between similar regions
   }     : RNAs			@     : known binding sites
   <,[,{ : opposite direction

About alignment...