Similar regions between promoters of metC

sub AAAATTAATAACATTTTCTCTTATCGAGAGTTGGGCGAGGGATTGGCCTTTTGACCCCAA hal .....TAACGATATTGTCACTGACCGTTCATTGG........TTTACCTTTTTACTCTAT -300 -290 -280 -270 -260 -250 sub CAGCAACCGACCGTAATACCATTGTGAAATGGGGCGCACTGCTTTTCGCGCCGAGACTGA hal CA.................................GCACTGCTTTTACCTACGGGA.TAA -240 -230 -220 -210 -200 -190 sub TGTCTCATAAGGCA--CGGTGCTAATTCCATCAGATTGTGTCTGAGAGATGAGAGAGGCA hal TGTTTAAAAGGGAATCCGGTGCAAATCC......................GAGATAGGGA -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]]]]]] ]]]]]]]] sub G-TGTTTTACGTAGAAAAGCCTCTTTCTCTCATGGG---AAAGAGGCTTTTTGTTGTGAG hal GGTGTTTCA..........CCACTCTCCCATATTGGTAAAAATATCCTTTTTATTTT... -120 -110 -100 -90 -80 -70 sub AAAACCTCTTAGCAGCCTGTATCCGCGGGTGAAAGAGAG-TGTTTTACATATAAAGGAGG hal ............CTGCTTTTACCTACGGGAGATAGGGAGGTGTTTCAAACAT........ -60 -50 -40 -30 -20 -10 sub AGAAACA hal ....... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...