Similar regions between promoters of pbpF
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCTCCGACTTGGTCAATGACTTCATAAGCGTGTGGTGCCTGGAAAACGGTATCTCCGTTT hal .......................................................CGATT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTTTCATGAATTAAAATGGCGTTTTCCTGCCCCTGCATCAAAAGGATATTTTCTGAGGGA hal GCTAGAGGATTTTCAAACGTTTTTT................................... -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TGCTTCTGTACGATCGTTTTTAAAAAATCGGCTGTCCCATATGTAATATAAACCTTCATA hal .............TCGTTTTAAGAA..................TATTATAAAGCATAAGA -180 -170 -160 -150 -140 -130 sub TCAGCCACCTCCTGCTTGCTAGTATATCAAAACAATGGTATAAGTTTCTATTGG---CGA hal ......................TATATCAACA........TAAGTTTGTATAAGGATCGA -120 -110 -100 -90 -80 -70 sub GTGCTTCGAACATAATTCCAAACAATTTTTCCCATACTACCTTTAGAAAGGCGAGGTGAG hal TTGCTA-GAGGAT--TTTCAAACGTTTTTT..CATAAGACGTAGAGAAATTTTAAGTGA. -60 -50 -40 -30 -20 -10 sub TTC hal ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...