Similar regions between promoters of spo0E

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AAAGTAGTGATGTGCTGGATACATTTTTTTCGGTTTTTCCTCTTTAAAATCGCTTTTCCG ste ....................................................CTCTTCCA -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCTGCCGCTCCGAGCATTATTGCTTTCTTTTTCTTCATTGGGCATACCTCCTGCCTGGCG ste CCCGCC............ATCACTTTCTTTTT..............CCTTCGCCATTTTG -240 -230 -220 -210 -200 -190 sub GCGTGTTTAAGATATTCTTCACCTGGGTATTGTTCTTCTAATCCTATCAATATATCTATT ste GCGCGTTGAGGATGATATTCGCC.........................AATTTATCACTT -180 -170 -160 -150 -140 -130 @@@@@@@@@@@@@@@@@@@@@@@@@@@ sub ATA--CCTGAAAAATTAACTTATTTAATGAAAATATGTTTACAAATAAAGTATAATCTGT ste ATTTTCCCGAATCACTTTCTTTTTTCGTCGTGATATGTAT---AATAATGTTTAGTTTCC -120 -110 -100 -90 -80 -70 @@@@@@@@ sub AATAATGCACAATAACCCAATCAAACTTGTTTCCTATTTCTTAGCGGCGAGGGGTGAAGT ste ACTAGGGC.................................................... -60 -50 -40 -30 -20 -10 sub GA ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...