Similar regions between promoters of ybaR

sub TGCCAAATGAGAGGAAAGATATTACTGTCATTAAAACGATTCTTGGTTTCATCCGGATAT hal TGGAAAATCAGAGCATAAAT........................................ -300 -290 -280 -270 -260 -250 sub GATAAAATGTCTCAGACTATATTTGAGCCATTTTTTTCTTCAGCAATCATCTTGCGTAAT hal ........................GAGTCGCTTTTTTTATGAGTAA..........TACT -240 -230 -220 -210 -200 -190 sub TGATAAAAATTTATTATGATACTCTTTGTATGACAACTCCTTGCCTCAATACAATATACT hal TTACCAACATTTAATATGA......................................... -180 -170 -160 -150 -140 -130 sub CAACGTTTCCCCGTTTTCTCCGGTCGTTTTTCTTTTCATTTTCTCCCGTAAAATAAAAAA hal .........................GGTTTTCGATTACTTTACCAACATTTAATATGAAT -120 -110 -100 -90 -80 -70 sub AGCTCCCAATACAATAGATATGGTGCGGATTTATT---TTTTACTAAAA--AGGAGTCGT hal AGGTTC.AAAACAATAGATGATGTACGCTTACATTCTATTTTTTTAAATCTATGATTCGT -60 -50 -40 -30 -20 -10 sub TATAT hal GTTA. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...