Similar regions between promoters of ycgH

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTGCTCCTTTTTTCATTAGTATGAGCGTCTGCTTCCTTCTCCATGTAAAAAGAGGCAAAA hal ................................................AGAGATGATAAA -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATCCGATGTATATAAGCTTTGGACAGATCACAATCTAACCTTAGATAAAAGGGGTTGAAT hal AGCGGATG...................................GATAAAAGCGGATGCGC -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<< sub AAATAATGAGCCAAACAAAAAAAGACCAGCCAAAAGGGAATCTGGCTTGGTGGCAGCTGT hal AAGTGCTGA..................AGCAAAAGGGGATTTTCACGATGTGG....... -180 -170 -160 -150 -140 -130 sub CACTGATCGGAGTCGGCTGCACGATTGGAACAGGCTTCTTTCTCGGTTCCAGCATCGCAA hal ............................................................ -120 -110 -100 -90 -80 -70 sub TTGTAAAAAGCGGTTTTTCCGTTCTCCTTTCATTTCTGATCGCAGGGATCGGTACGTATT hal .....AAAAGGGGATTTTC......................................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...