Similar regions between promoters of ydeG
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAATGTCTGGTGCCGAATTTGAAGAATTGGCTGCTCGACTTGGCGTGCAAGTGTATGCGG hal ...........GCCATTTTTGAGCAATGTGTTTCAAAGCTTCGCG............... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGAACGCTTTGTAGTGGGAAATAGTTGTCCTGAAAGGGCTGTAAGGGTTTCTGTCTGTG hal ........TTTTAAGTGAATAATGTTTGTC.............................G -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CACCAAAAACACTTGAAGAGCTTGAACAAGGATTAATGATCCTGAGACGTTTGCTAGACG hal AAGCAAAAGCACTTG............................................. -180 -170 -160 -150 -140 -130 >>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]]]]]]] sub ATCTTACCTAATATTGTTTGCCATACAATTATGACATTGTATGGCTTTTTTGTGCGTGTT hal .........AATAATGTTTGTCTAATAGTT.............................. -120 -110 -100 -90 -80 -70 sub ATGATGATCCACATCTAGAGGGAGGTTTATACAAAATTGGCTTTTAGAAAGGAAGGTCAG hal ............ATCTAGAGGGA......................ACAAAGGAAGG.... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...