Similar regions between promoters of ydfM

sub AGATCTTCTCATGTCAATAGGTTTTTGAAAATTAGGTGGAAATTTTTCACTGACGGCAGC hal ......TTTCAAGTAAAAACGTT..................................... -300 -290 -280 -270 -260 -250 sub ATTTTAATAGCGAATCATCACTGTTGTTACATAAGAACTCATTTGTTTGCTGTATGACCT hal ...............CATCGCTATTCTTA...........ATTTGCTTGC.......... -240 -230 -220 -210 -200 -190 sub TTTTAGCATAGCTCCAACTTTTTTTCTGTCACCTTATTTATTAGTAAACAGGAAACAACG hal .........AGCTCCTATTTTT.............AATTACTTGATTTCAAGTAAAAACG -180 -170 -160 -150 -140 -130 sub TTGCTATAGACCCACTCGAAATTGAATTGGTATGATAAACAAAGTGATTACACAGGAAAG hal TTGCTCTAGACCCACTCGATCCCCGTCTGATAGGATAGAAA................... -120 -110 -100 -90 -80 -70 sub GATACGGAGAGCGTATATAGAGCACTCCTATTTTTTTGTGCAGTTTTATAGGAGGAAAAA hal ........................CTCCTATTTTT.....CCGTCTGATAGGATAGAAA. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...