Similar regions between promoters of ydiA
}}}}}}}}}}}}}}}}} sub GGAGTGCCCTAAGGGTGCAACCAAAATAATCCTATACAAATATGGTCCGGTAGTTCAGTT hal ................................................GGTGGAGCAGTC -300 -290 -280 -270 -260 -250 }}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}} sub GGTTAGAATGCCTGCCTGTCACGCAGGAGGTCGCGGGTTCGAGTCCCGTCCGGACCGCCA hal TGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGGCGGTTCAAATCC.............. -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]]]]]]]] sub TTAATGTAAACGAAACGATCATGTTTTCGTTTTTTTTGTGTTTTCTTTTACTGTATCTTC hal ............................GATTTTTTACTGTCTTCTTTT........... -180 -170 -160 -150 -140 -130 sub TGCTTGGTGTCATAGCCAAGCTTTCTTTATATCGGGAACATCTTGGATATTCCAGCAAAA hal .....................TTACTTTATAACG......................AAAA -120 -110 -100 -90 -80 -70 sub TTCGATAAACTAGGAAGAGCACAAATAG---GCATAAGCAGGGTTGA-AAGGAGGTTTTG hal TCGGCTACACTAATAGAGGATGAAACAGATCGGATAAG--GGCTTCATAAGGAGGT.... -60 -50 -40 -30 -20 -10 sub GTTC hal .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...