Similar regions between promoters of yetH

<<<<<<<<<<<<<<<<<<<<< sub CCGTTTTGTTAGTTGAACCAATCACCATTCGTCCTTGCCTTTTCCGATTTACCTATGTCT hal ..............................GGCTTTGATTTTTTCGATGT.......... -300 -290 -280 -270 -260 -250 sub GGTTAACCAATGGCCGCTCATTTTGGTTTTACCCGATCATCCTTGGC-AGAAGATCCGTC hal .........ATGGGAGCAGACTTTTATTTT...........CTTGGCCAGAGGAGATGGG -240 -230 -220 -210 -200 -190 sub GGCGG-CTTTTATTGGGATTCCTCACGGCGCCGCTGGGTTTATTTCGCCTTAGACACAAA hal AGCAGACTTTTATTTTGA..............GCTTTGATTTTTTCGATGTGGATGGCAA -180 -170 -160 -150 -140 -130 sub TCACATCGATGTTGTAAGCTGCTCATTTTAATAATCAGCCGGTTTCCCGGCTGATTTTTT hal TC.................................................TGATTTTTT -120 -110 -100 -90 -80 -70 sub TATGTTACTTCGGCCGTAAACAGGTTATAGTATTATTATCTTTTCAACTTGGAGGTTTCC hal .ATTTTACTACGGACG.................TTTGATTTTTTCGATGTGGATG..... -60 -50 -40 -30 -20 -10 sub CT hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...