Similar regions between promoters of yhbB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CATTTTAAGGATGCTTCCGCACTGCCTGAATTGACGGAACTGATGCACAAGGATCCGCGT hal ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CCTGTCATCAGGGGGACAGCCGCATGGGCAATCGGAAAAATCGGAGACCCCGCCTACGCG hal ..............................AACGGGAAAAGAGGAG.............. -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GAAGAGCTTGAAAAAGCGCTGGAAAAAGAGAAGGATGAAGAGGCAAAGCTGGAAATTGAA hal ....................GGGAAAAGAGGAGG.......................... -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> sub AAAGGAATTGAGTTGCTAAAAGCTTCAGGCATGAC--TAAACAAGGCCTGTCCTGACATA hal .................AAAAGCTAGGGTCCTGGCGATAAGTTAAGTTTTTTCTAACATA -120 -110 -100 -90 -80 -70 sub CGTATAGAGCAGAAGGAAAAAACACTTGAGATCATCCAAGTGTTTTTTCTCTATAAAAAA hal AGTTTTAGGACGAATG....................CATCTTTTTTTGTTTGATAAAAAA -60 -50 -40 -30 -20 -10 sub GT hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...