Similar regions between promoters of yisX

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AACGGCCACCCGTGCAAAAAGATGATCGGCCTTCCATGTCCGATATCCTCTACAAACAGT hal ....GCCATTCGTTCAAAAGCAT..................................... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTCACATGCTCCTCGGTTTTGATGTAATGCCCCATTCCGCATTCCTCCTGTTCCCTTTGG hal ......................................GCATTCCTC............. -240 -230 -220 -210 -200 -190 sub CTTTTTCGGCCTGTAAACGCCTTGACGTATAGGAAGCTTTCCATTTATGCTTACAAAACA hal ......................................................AACACA -180 -170 -160 -150 -140 -130 sub AGCGGGCTGCTGTACCAAGAAA-AGGCTCTTCACGATTTACTATATGTATCAATTTCCTT hal AGCAGGCTATTTTACCACGAAATAGGATC.............AAACGTATCAAT...... -120 -110 -100 -90 -80 -70 sub AACGATCTATTAAATTGAACCCGGAAGCCTCTGTTTTTCGGGCAGCAAAGGATGTCATCA hal .ACGAACTATTA................................................ -60 -50 -40 -30 -20 -10 sub C hal . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...