Similar regions between promoters of yjcC

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATGCGAATATCCAAGCCGATCCCAGCAGCTCACATAGTGTATAGAGAGTAAAGGAGGTGC hal .TCCAAATCGAAATGCCGATCACCTCAGCTCTC........................... -300 -290 -280 -270 -260 -250 sub TTATCTATGGGCTTTGGATACGGATTCGGCGGCGGCTACGGCGGCGGCTGTTATGGCGGT hal ............................................................ -240 -230 -220 -210 -200 -190 sub TATGCTGGCGGTTACGGCGGCGGCTATGGTTCAACATTTGTTTTGTTGGTCGTATTATTC hal ................................ACCATTTGTT.................. -180 -170 -160 -150 -140 -130 sub ATTCTCCTCATCATCGTAGGTGCATCTTTCTTTTAAGATGTATTGAGGAAGTACGGGTTA hal AATCTTCACGATGTCGTAAGTG.............AGATGAATTAATG--GGACGGGTGA -120 -110 -100 -90 -80 -70 sub TAACCCGTACTTCCTTGCCTTGTGTTTATTTTTAAAAATGTTGGAAAAGCACATTGTATT hal ...................TTCTGTTCTTTTTGAA......................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...