Similar regions between promoters of yjdC
sub ACTTTATCCCCGAAGATACCAAATCACTTTTCTTCATCATGTTCTTACTTTCGTACTCAT hal ..............................TCTCTATAACTTTCTTACT........... -300 -290 -280 -270 -260 -250 sub ACATTAGAAAATCTTCGTTCTAAATAGGTGAAGAATTGGAGTATTTTTATGAATTTCTGC hal ............................................................ -240 -230 -220 -210 -200 -190 sub TGAATATACATTACATAGCAAACTCAAAGAGTATAAAAATCGCTTTTTTCCGGAAGCTTC hal ........CATGTTATAAAAAAATCAATAAG-ATAAA......TTCCTTCTCAAGGTTTC -180 -170 -160 -150 -140 -130 sub GGTAAAAAACGAAACTTTTGTCTCTATGATTTTGTTTTATAATGTAAACGGTTTCTTATA hal GGTACAA...................TCATTTGGTCTTATCATGTTA............. -120 -110 -100 -90 -80 -70 sub TAGTATACTTATACTATCAATTTGCTCAAGTAGATA--CTGACAGGAAGGATAGAAAAAC hal .........................TCAATAAGATAAACTTAAAGGAATGATACAAA... -60 -50 -40 -30 -20 -10 sub AG hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...