Similar regions between promoters of ykuC
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CCTACTGGCGAGTTTTACATTATTAACCGCCAGCGCAATCCCGGCGGCCCATTTGGCGCT ste .......................TAACTGCCATGACAA.............TTTGTTGGT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATTGGCTGAGCCTTTCAAAGCAGCACTACGGAATACATGGGACGAATAATCCCGCTTCG ste TTGCGGCTGACGCTT........................GGAACGTATATTC...CTTCG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTGGTAAGGCTGTTTCTAAAGGCTGCATTCGCATGCATAACAAAGACGTGATCGAACTT ste ATTG............................CAAGGATAAAAAATA............. -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTTCAATTGTGCCAAACGGAACGAGAGTCACGATTAACCGGTAATGTTTTCTTATTTGT ste .....AATAATACAAATAGGAACG...................AATATTTTTTTATAT.T -120 -110 -100 -90 -80 -70 sub TTCAA-AAACAGGCGGTT-TATAATATGATAAAGTGGGACCTTTAGGGTAAGGAGCGTTT ste TTCATGAAAAAGGAGGATATATAA.ATGAAAAAGGAGGATATATA............... -60 -50 -40 -30 -20 -10 sub TT ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...