Similar regions between promoters of ykzB

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTTCCTCATAATACCTGATCTGTCTTACGGACAATCCTGTCAATTCACTCACAATTCCGA ste ............................................................ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTGAAATCACTTTTTTGTCTTTATAAGAATGATCTTCTGTGGTCATTTTTCCACCCCTGG ste ................................................TTCCACCCC... -240 -230 -220 -210 -200 -190 @@@@@@@@@@ sub ATGTCTTTTGATAATAGTATATAAAAAACAAAGAGAAAAAACCTGACGCTTGTCATATTT ste ....CTTTTGTAAATAAAAT...AAAAACAGGGAGGGAA..................TTT -180 -170 -160 -150 -140 -130 @@@@@@@ sub TCTAACATCAAATAGAAGATTTTTGAAAAAATACGGAAGAAAAATTAACAAGAATAATGC ste TGTAAATAAAATTAACATATTTTTTAAATTTCCTGTAAATGAGCTTAACA.......... -120 -110 -100 -90 -80 -70 sub GTAACACCCAAGCGCGTTTTATCCTTTATGTAACGAATCAAACGAGGAGGAAGGATAATC ste ............................................................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...