Similar regions between promoters of yodI

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGCGAATGGCATAAACTCCTAAGATCCTATGGCTTTCAAAAAACAGAAGCGATGTCACTT ste ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTTCCGGAAGACATGGAATTTGAACCAACCACAGAAATGGATTTATCGCAAACGATTGAT ste .......AAGGGACGGAATTGG................GGATTGTTTCCAAACGGGTTTT -240 -230 -220 -210 -200 -190 > >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub C--CCATCTATTACGATACGCTTCAAACACATTATCAGCTCATGCAGTTATATAGTGAGT ste GGGCCATCT-TTACGA....................................TTGAGAGT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACATGGGTCATTGTATTTTTATCGCGTACAAGTAAAACGGCGTATCGCCCCCTGTTTTCG ste CCGTTTGTGGTGGTGTTT................AAACGG-GTTTTGGGCCATCTTTACG -120 -110 -100 -90 -80 -70 sub TCCAACCTTTTTTTCCTATCTATCATATGCTGATAGAAAGTCAGGATAGGAGGGGAACAA ste ACCA........................................................ -60 -50 -40 -30 -20 -10 sub TA ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...