Similar regions between promoters of yqgO
>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTAAACCCATCACAAATTGACTTGAT--GATCGTTCCGGGTGTTTGTTTTGATGTTAACG hal .............AAAGCGCCTTGATAGGATCGCT.......TTTGTTTAAAGATGGACG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GGTTTAGGGTCGGCTTTGGAGGCGGCTATTATGATCGCTATTTAAGTGAATATGAAGGGA hal GGT....................GGCTATAACGATGGATA.............GAAGGCG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGACAGTCTCTTTGCTTTTGGAGTGCCAGTTGTTTGCGCACGTACCCCGTCTGCCGCATG hal AGCGGCTCGTTTTGTTTAAAGATGGACGGGTGCTCGTCCAAG.................. -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACATCCCGGTACATAAGCTGATAACAGAGGATCGGATTATTTCTTGTTTTTCATAACTTT hal .........TACATCGGGCTATAACGATGGATAAAATCCTTCATCATTT........... -120 -110 -100 -90 -80 -70 sub CCTGTCCCTTATTCGAGAATAAATAAGGTAGAATAACAAACCCTATTGGCAGGAGGGATA hal ................................................GAAGGAGGGAT. -60 -50 -40 -30 -20 -10 sub TC hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...