Similar regions between promoters of yqzD

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTCTTCTGAGATTTCCCAGCTTACGGTCAAGGTGTGAGCGTTTTGAATGATTATGTCGA hal .................................TGTCAGAAAATCGAATGAATTTTTAGA -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATGTGTCCCTAAAAAAGGAAAGCTTATGTCGTATATTATAGGGAAATGGGTGTTTATCCA hal AAGTTTACATTATAGAAG.......................................... -240 -230 -220 -210 -200 -190 < sub TGGACTCCTAACATTCTCCTTTCCAATCGTTCACTTCGTGTTCCTATTAAACCATTACAT hal ............................................................ -180 -170 -160 -150 -140 -130 sub GAAGAAGAAGCGAAGAAAGATTTCTCGACAAAATCTC-GTTTTTTTCGCGAATTCCTTTA hal ...GAACAAGAGAGGAAAAATGTCT....AAAATGTCTGTTTTTGTCCCTTTTTACTTGA -120 -110 -100 -90 -80 -70 sub GAAACTATTGGTTTTATGGTATGAAAAAGAAGGATACAAAAAGAATAGAAGGTGATGAAA hal TGCACTATTCATATCAT........ATAGAAGGTTAAAAAAA.................. -60 -50 -40 -30 -20 -10 sub C hal . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...