Similar regions between promoters of yrrT

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GGCTTTATTGTTTTCAATTTGTGTATTGATTTTCTTTTCAAGCTCCTGCAATGAAGCCGC ste .GCCTTGTTATGTTCAATTTGTTCGTTGATTTTTTTCTCGAGCGTCCGCAAGTCGTCCGC -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTCAAAAAATTCCACTTTGTCTTTAATCAGATCTAATTGAAAATTCATGTCTTGACCCTC ste TTCAAAAAATTCGATTTTGTCCTCGATCAAATC-AAGAGAAATGTTCGGCATCGTTCTTC -240 -230 -220 -210 -200 -190 sub CAGCTTTCACAAGTCATATGAAGTATAAGCTTTTTTGCGGTCAATGCGCAATATGAGATG ste CTCCTTTCCATTGTCAG-TGTAGC--AAATTTTCCCGCCCTCATCCACCGATGTACAAGG -180 -170 -160 -150 -140 -130 sub GCATAAAATAC--ACAAAGTGTTTTAGTACCTGCTTTTCAGAATATGTGGTATTATAGGA ste GGGAACAATACGAACGAAACATGATCGTTGAACAAGGGAAAAACATATGCTACAGTAAGA -120 -110 -100 -90 -80 -70 sub ACTGTTCCATCATTAATCCATAGTATACTTATAGGAATTATTAAATAT----GGAGTGTG ste GCAGGCAATACGAAAAAACATACTATATATATAGGAATTATAAACTTTTTTTGGGGTGTG -60 -50 -40 -30 -20 -10 sub ACAAAT ste ACCA.. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...