Similar regions between promoters of yslB

<<<<<<<< sub CCAGACATTACTTTACCCCCTGTTTGATAAGTGCGAAATGTGCTAAATCTCTTCCCCCAC hal ..AAACGTAAGATTGACCCCTGGTTGTT----GTGAAATAGGCAAAA............. -300 -290 -280 -270 -260 -250 sub TTCTTTCAATTGTAAGCACTTTATTAAGATTTATTGACAATTTCATTTTACTCCTCCCTC hal ...........................GATTCAATGCTGATTTCAT.............. -240 -230 -220 -210 -200 -190 sub AAAAGGGCGTCAAGAAAACGCGTACATAAAT-TATAATTTTCCGAATTGAT------TAG hal AAAATCCCTCCGCGACCACTCGCGCTTAAGTATATCATGTCCAGGATAGACGATCTATAG -180 -170 -160 -150 -140 -130 sub TTGATTGAAAAATTTTATTTTATCAATATATATTTCTTGCTTAATTTTTCATAAGAATTA hal AGAATGGCAACAAAGTAGTTTAT-AATATA................TTTCATAAAAAATC -120 -110 -100 -90 -80 -70 sub CAGGATCATTCTGTAATCCTCCCCCCTGTTTGAGCTATAATATACG---CAGGAGAGAGG hal C..................................TATAATATAAGGAGCAGAAGAGAGG -60 -50 -40 -30 -20 sub GGAGACAGAT hal G......... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...