Similar regions between promoters of ytcG
>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]] sub AAACAGGCGCAAGCGAAAGTACTATAAAGTAAATTGCGAACACAAAGGGAGCTGAAGCTA hal .................................................AGCTGAAGGAT -300 -290 -280 -270 -260 -250 ]]]]]]]]]]]]]]]]]]] ]]]]]]]]]]] ]]] sub GAAAGCCATTATGCGCTTT-TTAGCTTATGC--TCCTTTTATTTTTATAAAGAAACGAGA hal AAAGGGCCTAATCTCCTATCTTAACATAAGGAATCCTGCTCTTTTTGTTATACAAGGCT- -240 -230 -220 -210 -200 -190 sub GTGTCAGCTTTTTCTTTTTTCATTTTTTTTGTAAAATAAGAAGGAGATTTTCACAAACCA hal -TGTCA-CTTTTT-----TTCATTTTTACTATGAT-TA--AAAGAGATTTTCTGTAAGCA -180 -170 -160 -150 -140 -130 sub CCTAATGCTATAGAAACAAATTTAACAACGGCTCTCCCGACAGATGCTGTCACATCTATT hal CGT......................................................... -120 -110 -100 -90 -80 -70 sub TTTAAAAGGCGGAGGCTGCCGAAAATACATTGCAGGGAACGATATAGTTGGGAGCTGATT hal ............................................................ -60 -50 -40 -30 -20 -10 sub TTA hal ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...