Similar regions between promoters of ytfI
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTTCAGGCAGACGCTTGGTAAAATGGTGTTCGGCCTCAAAGTGGTTTCTGTGAAGCAAGA hal .................GGAAGATGGTTTTTGGGTTGAAGGTTGTGAATC---AACAAGG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> > sub TAGCAAGCTGACATGGAGTACAGTGATTTTTCGTGAAGTGGTTGGACGGTATATTGAT-A hal AGGCCCCCTTTCATGGGGAGAGGTGCTGTTCCGTGAAGTTGTTGGGCGCTTTCTTCATCA -240 -230 -220 -210 -200 -190 >> >>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AG-ATTTGGATTTTATATA----------TCGTTGTTGCCTTTTCACCTACAAAACAAGG hal AGTATTCGCACTGTTTATCCTCCTTTACCTAGTGGTGGCGTTTACGAGGAAAAAACAAGG -180 -170 -160 -150 -140 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GATTCATGATTACATCGCGGATACCACCGTGGTGCATGAAAAATTATACCGCAAATAACC hal GATTCATGATATGATCGCTGACACGTATGTTGTCCATGAAGAATCATAACAGAA...... -130 -120 -110 -100 -90 -80 ]]]]]]]]]]]]]]]]]] sub GATAACCCGGACTTCCGTCCGGGTTTATTTTTTTAGGAATTGGCGATAATGCTCCTAGAG hal ...................CAGGTTTATTTTT........................AGAG -70 -60 -50 -40 -30 -20 sub GAAGTGAAGAAT hal GAAGCG...... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...