Similar regions between promoters of ytgA

>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]] sub GTTTTCACACAGCATGGTTAAGAAAAAAGCATTTTGCTATTTTGAATAAATGACACTGTG hal ...................AAGAAAAAACTAATTTTC......GAACAAAAAAGTTTGTC -300 -290 -280 -270 -260 -250 ]]]]]]]]]]]]]] sub CTGTTACAGTAAAAGTGTTCGTTGAATACATCCCTTCTCGTTTGGACCGGCTGCTGACCC hal CTGAGACAATCTATTTTTTTGTAG...........................TCCTGAGAC -240 -230 -220 -210 -200 -190 @@@@@@@@@@ ]]]]]] sub AGCCGGTTTTTTTATGTAAATCAGCTTGACAAAAATGGCCAAACGCGATAATTTTGCATG hal AATCTATTTTTTTGT....................................TTTTGCCTT -180 -170 -160 -150 -140 -130 @@@@@@@@@ sub AGGGAAACTTTTTGTCCTGTGTAAATAAAACATGCTTTTGGCTAATTTAATGTCACATGT hal GGGGAAACTTTTTGGCC........................................... -120 -110 -100 -90 -80 -70 sub CTAAGAACTGACAACATAAGATAAAACAATCGGACATTGATGGCAAAGAGGAGGAGAAAT hal ...............AAAATATGAAACAAT.............................. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...