Similar regions between promoters of ytqA
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTAGCTGCATTTGTGCATCACTATATTCTTGATCGTTATAATGCTCTTGTTTAGAAGCGA hal .TAGCTAAAGGTGAGCACCGCT....................GCTGTTCTTTCCTCGCTT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTTCAGCTGTTCTTCAGCATAATCATAGGCCTGCATACATTGCTGGAGATGTTCATCTA hal GTTTCAGCTGTTCTT.............GTCATGCAAACATTG................. -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<< sub CTGATTGTCTTGTTGCCACAGTAACCCCTCCTCTTGGTAATGGAAATCATCCATCATTCA hal ........................CCCCGCCTTTT......................... -180 -170 -160 -150 -140 -130 sub TATTGTAGCCTCATCTGACTTTATTCAATAAAGTAATTTATGGTCGATATTCATTTGTTC hal ...................................ATCTAAGGACGATGT...TTTCCTC -120 -110 -100 -90 -80 -70 sub TCTTGTGAAATGCGTGCTACAATTTTAGGATGCAATCGTACGCAAGGAGGCACATGAATT hal GCTTGTTTCATG..........TTTTTGGGTTCAA......................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...