Similar regions between promoters of yvgW
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTCTGGGCGCTTGGCTATAACAGCCTCGGCATCCCAATCGCAGCACTTGGATTTTTAGCA ste TTCAAGGCGCTTGCCGA...................ATCGCATCATTTG........... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CCGTGGATAGCAGGAGCAGCAATGGCATTCAGCTCCGTTTCCGTTGTTCTGAATGCTCTT ste ..................................................GAGAGCTGTG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]] sub CGTCTGCAAAAAGTAAAATGAAAAACCGGCTATATGCCGGTTTTTGTTTTTCATTGACAC ste CGTTTGCGA........ACGAAAATCGGGCGAAGATCGTGTATGCGCTGTGCAGTGA... -180 -170 -160 -150 -140 -130 sub TTTCTTGGAAAACAACATATAATAGGTGTAACTTATATATG--AGTATATGCTCATATAT ste .......GACGACATCGCATCATTTGCGCATCTTGTATAAGCAAGGAATTGTGCA-ATAT -120 -110 -100 -90 -80 -70 sub ATAAAATAAATACAATACTCATTGATACGCTTTGAAGAGGGAACCCTAAATCGGAAGGTA ste CGAAAAGA..........TCGTGTATGCGCTGTGCAGTGAG................... -60 -50 -40 -30 -20 -10 sub AG ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...