Similar regions between promoters of yvlA

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCACGATTCATTCTTTTTTGTTCCTGAATCAGCTTTAACACTGATTCTTGTGTTACTGTA ste ..................................TTGAAACCGATTCTCGAG........ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<< sub TAGTCACTGGGATCTTTCTCCATTGCTTGTCCAGCCTCCTTGGTTGCCGTAAGCTTTTTA ste .......................................................TTTGG -240 -230 -220 -210 -200 -190 sub CATATTGTAATCGGTATAGCCGGAAGATTCTACTTCTAAAACTTTTTAAAATCCAATTTC ste CATATGGGAGACGG....GCCGGAAGA...........AAACTTATGGAAAGGGGATTTC -180 -170 -160 -150 -140 -130 sub CGTAAATCGGAGCATGTCTAAAGAATGAATTTGAAACCTGAAGAGATTTTAAACGTATAA ste CGTGAAGCGGCGAAGGCGTAAAG.....ACTTGAAACC...............CGTATAT -120 -110 -100 -90 -80 -70 sub ATAAGTAAAACGTCCCTGATCTTTTGTCATGGACAATTCACAATAGGAGTGTGGAATGAA ste ACAAGGTAAAAGAAACTTAT........................................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...