Similar regions between promoters of ywfK

>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CATCGGCTATAAAATCGCTCAG--CGTTTGGGCAACTTTGAAGCGGTAGGACCAATCCTG ste CCTCGACTATAAAATGAAATAGAACGGTGGCGCGACCTTTGCCCATTCGGCGCTGCCGCC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAAGGTTTAAATATGCCTGTAAACGAC-----CTTTCAAGAGGATGTAACGCTGAAGATG ste CAATATCCATTTATTCCTATAAAACAAGTATACTTTAAAGACGATATTA........... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]] sub TTTACAATCTCGCATTAATTACAGCGGCGCAAGCACTGTAATAAAATTGAAGACAATGGC ste ..............TTACTTGCAGCTGC............ATAAAATGAAATAGAACGGT -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]]]]]]]]] sub AGCTCTCGACCGAGGGCTGCCTTTTTTGCGCTTCTGTATAGCCCTTCTTTACCAAGACGG ste GGCGC.........................................CTTTACCGCAAAAC -120 -110 -100 -90 -80 -70 sub ATGATATGAGTACAATAAAGAAAACTAATCATAACCATATATTTCATTAATGACAGGGGT ste AAAACATTAGTAAAATAAATATAAATTATTGAAACTATTAATTTTTATAAT......... -60 -50 -40 -30 -20 -10 sub GGGGTTT ste ....... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...