Similar regions between promoters of yyaD

sub CGATTACAAGTATTGTCCCCCATTGCCTCGATCATGATCAAGCAATGGTCTGCTTATGAA hal ............................................................ -300 -290 -280 -270 -260 -250 sub ACACTTGAATAGGTAGGAATGGTTAGAAAAAAGTGAAGAGTGAAGTTCACTTCTTCATTC hal ................................GAGAAGAATCGGTTTCCATTCATAATGC -240 -230 -220 -210 -200 -190 sub CGCGGACAAACAAATAAATATCTCTTTTTAGACTGCCGTATTAGCAGTCTTTTTTATGTG hal .......ATACGGATATATTTTCCTTTCTATAC.........AGGTGGCTTTTTT..... -180 -170 -160 -150 -140 -130 sub TATTTCGTATGATAATTTCAGCTTGTGTTCAAATGTC-TATGAAAATATGGC-ATGTTTG hal ..TTTCCATTCATAATGCAAGCTCCTTTGCCATAGTAGTAACAGTATACGGATATATTTT -120 -110 -100 -90 -80 -70 sub CTTTCCTTTATTTATATAGTAACAATAACGGGAACAAGCTGAACTTTGTCTATGAGGTGA hal CCTTTCTATA.......................ATACGTTGAACTTTTATTACGAG.... -60 -50 -40 -30 -20 -10 sub TA hal .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...