Similar regions between promoters of yyaH
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GGCGGGTTCCGACTGCTATTTATGCAAATAGTGATGAAGTGGCAGCTGGAATTCATCTAT hal ...............CTATTCATCCATG-AATGATGAGATG................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGCCAAAAAGAATAATTGGGATGTTGAAATCATAGGCGAGGGAAATACTTCTATCAGCC hal ........ATGAATGAT-GAGATGATTTAATCATCCGCAAG................... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTGTTCTTGGTTTTCCGTCGCTTGATTTGAATCTTGAGCAGCTCGGCATCGCAGCATTTT hal ............................................................ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTCTATTTTTGCAGGATGAACCCGCTGATATCAAAATTCAGCATAAATTTAAGAAAAAAG hal ......TGTTACAGGGTCAGCCCATTGTTGTCTAGG---ACCATACTGGCAAGAAAAA-- -120 -110 -100 -90 -80 -70 >>>>> sub CTTGAACTGAAATGCATTTCATACCTTATAACTTCATTGAAGGCGAAGGAGGAGGAAGAA hal -TTAAACAAAAACGAATTTCTTGCCT.................................. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...