Similar regions between promoters of aroF
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGCACAATTTGCTGGCGGATCGTTATGAACAAGACTTTGACTTAATCGTGTGCCGCAAT hal ..................GATCGTTCAGAAGAAAATTGTCATTTA............... ste ..................................ACATGGATTTGATCGTCTGCCGCAAC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTATTTATTTATTTTACAGAAAGCGCGAAGGAAGAGCTGTATTTAAAAATGGCACATAGC hal ..ATTTTTTTATCGTAAAG................GCTGAATTTGTAAATGCC....... ste GTGCTCATTTATTTTACGGAAGAGGCGAAGCGGATGCTGTATCGCAAATTT-CACGACGC -240 -230 -220 -210 -200 -190 > >>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub T-TGAAGAAGAATG-GAGTTCTTTTTGTCGGCAGCACCGAGCAAATCTTCAATCCCGAGA hal .....AGACGAATGAGACATTTTTTTATCG.............................. ste GCTCCGGACGGGAG-GCGTGCTGTTTGTCGGCAGCACCGAGCAGATTTTCAATCCCGGCC -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>> sub AATTTGGCCTAGTCCCAGCCGATACATTCTTTTATCAAAAAAAGATAGA-----CTGACT hal ....................GAGACATTTTTTTATCGTAAAGTGTGACA-----CAG... ste TGTACGGTTTTGAAGTCGAAGAGACGTTTTTTTACCGAAAAAA-ATAGCTCGCGCCGGCT -120 -110 -100 -90 -80 -70 sub T-----TTTGCTGAAA----------------AATATGTTATAGTA-GTCTTACTTAAAA hal ............GACA----------------CAAATGATAAAGTATGTTATAATTTAAC ste TCTTTTTTTCCTGAAACTATTTTCATTTTTCGAATTTATGATA-TA-TTTTTACTTAAAC -60 -50 -40 -30 sub GCGTTAATGCGATGAAGGGAGAAGAAGTC hal GCACAAAAGCAATAAAGAGA......... ste GCGTTAAAGACCTGAAGGGAGA....... -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...