Similar regions between promoters of cotK
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTTCCCATTTGTAGTAAACGTTTTTCTCGCTTGGAAAACGTCTTTTGCTGCAGTTTTTT hal .............AGAAAGCGCTTTTAACCCTTTGCGACCTTTTT............... ste ..TTCACAATAATACTATACTATTTTTTCGC............................. -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<< sub GCTCGTTTGCCATTCTCCAA---AATCCCCCTTCAGATCAG-ATCATTCTCAGATGAACA hal ..TCGTTTGTCTTTGTCATATGCAGTCCCTCCTCCAAACACTATCATAC........... ste .CTTGTTTCGCCATATGTAT---AA-CCCCCTTCACTTCAC-A................. -240 -230 -220 -210 -200 -190 sub TTACATTCCATCACAATTTTCTCACAATTTCATATTAAAACAAAATCATACA-TAA-GTA hal ..........TCAAAATTTTTTCACGAT---AAATTAAAAACAGCGGACAAAGTAC-GTA ste ...CAATCCCCATAAAGTTCGGCACGACTTTATCTTATTATAGAACAGGACA-AGTTGTA -180 -170 -160 -150 -140 -130 sub AATATCAATGTTTTTATTAAATACAATAAGTTCGACTTATGAGAAAAATGTACCGGTAAT hal AAT........................AAATACGACTCATG-GAAAATTGGA........ ste AATA...ATCTTATTATAGAACAGGACAAGTT.................GTAGTTGTACG -120 -110 -100 -90 -80 -70 sub TTTTACTGTTTACGCTCTCTCATATAACACAATAAAAGAAGCCATA--TTATGATTGAGG hal ........................TGACGCAAAAAAAGAA.................... ste TCTTGCCGTTTAC.CTTTATCTTATTATAGAACAGGACAAGTTGTAAATAATGATT.... -60 -50 -40 -30 -20 -10 sub TGATAATG hal ........ ste ........ -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...