Similar regions between promoters of ctsR

}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}}} sub GCTCTTCAGCGCCGATGGTAGTCGGGGGTTTCCCCCTGTGAGAGTAGGACGCCGCCAAGC hal ............................................................ ste ................................CCCCTGCAAGAGTAGGTCGCTGCTAGGC -300 -290 -280 -270 -260 -250 ]]]]]]]]]]]]]]]]]]] sub AAGCTTAAACCCAGCTCAATGAGCTGGGTTTTTTGTATTTTGGTTTATTGGTA--TCATA hal ...................................................TA--TAATA ste AAAATGGAAAGCACGTC....................TTTTCCTTCTTTGGTCACTCTTG -240 -230 -220 -210 -200 -190 sub AAATTCCACTTAACTGTATAATATAATAACTTTATACCGAATTTTAAATCAGCAATCAGG hal AAATT..............ATTATAATAAAATTA.......................... ste AAATTTTCCGTAA-TACATTGTATAGTAA..........................TGACG -180 -170 -160 -150 -140 -130 sub TTTTGTGGACCGGGAAAATGGAAATAATGAAGGATAGAGCGAGAAAGTTGAAAATTCTCG hal ...............AAATGGATGAAATGAAG............................ ste TTTTATTGTCCAAAAAAACGGATAT......................TTGAAATTTTCCG -120 -110 -100 -90 -80 -70 @@@@@@@@@@@@@@@@@@@@@@@ sub AGAAACGGCTTATAGTAAGATTAAAGTCAAATATAGTCAAAGTCAGTAAAGGAGGGGGTT hal ..ATATGGATTATAATAAAATTAG-GTCAAAGATAGTCAAAGTCAAT............. ste TAATACATTGTATAGTAAGAGTAAGGTCAAATATAGTCAAAGTCAACAAA.......... -60 -50 -40 -30 -20 -10 sub GA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...