Similar regions between promoters of cwlJ

sub TTTGTCATTTGATTTGTTATGTATAATTCCTCAAATGTAAAAAGTTAAACCTTATTTCTT hal .............TTTTTATGTTTAATT..................AAATCTGTTTTGTT ste ............................................................ -300 -290 -280 -270 -260 -250 sub TTCGGAGGCGGGTGCAAATCTGCTGGGGAGAGGTCAATGATGTGAATCCAGGAATTGAGG hal TT.......................................................... ste ........CCGGCGAACTTCTTCCTCCGAAAGGTCAACCAAATGA............... -240 -230 -220 -210 -200 -190 sub CTGCGGCG--CTTCGACAGCGGAAACGTGAAGCTTGTACTGCACCGGACGCTGCTTTGAT hal ............................................................ ste ...CGGCGAACTTCTTCCTCCGAAAGGTCAACCTTGCACGCCATGTTACGGGTCTTTCTT -180 -170 -160 -150 -140 -130 sub GCCCAACAGCCCATTATGTTTGCTGTTTTTAGATGAATAAATTTAAAAACTTCTCCTGTC hal .........................TATTTTTATGTTTAATTTTA............... ste GCGCAACGG...............................................TCTT -120 -110 -100 -90 -80 -70 sub CCTCCGTCATCACTTCTGAAGTAATGAAATATGATGAAAAGAGATCAAGGGGAGGTGACG hal ........ATCACTTTCGATGCATCGCACCGATATGGCAAG---TTAAGAGGAGGTGA.. ste CCGCCGTCATTCCTTTGCACGCCATG.........................GAGGTGACG -60 -50 -40 -30 -20 -10 sub TG hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...