Similar regions between promoters of cysE

sub TAAATGATTGTTGACAGGGAAGAGTATAAAGCTTTAGGCCATTACAGAAAGGATCTTCAT hal .......TTGATTGAACGGAAG-GTATACTTCATTAG...................TCGT ste .........GTTGACGAGGAGAAGTAGGAAGCAT--CGGCATCCCAGAGAG-AGCCGCCT -300 -290 -280 -270 -260 -250 sub TGGCTG-AGAGAGATCCATGAGCCGGGTTTTA-GAAGTGCGCCCTTAAGACCTT---TGA hal TCGTTGCAGATAGATGGATGAGTCTG...........TGCACCTCTGAGCCCTTGATTGA ste TGGCTG-GAAGCGGCTTATGTTCGGTGCTGTCTGAAGTGCGCCTCGGAGTCTCC---TTT -240 -230 -220 -210 -200 -190 sub A-GAACGTTTTTTGAAA---TCAGTATTCAAAGGCGGCCGC----CGCCGTTA---CAGG hal ACGGAAGGTATACTTCA---TTAGTAGGTCAAGGCGGCTTG----CACCGTTATTGCAGA ste C-GAACCGGAACAGAGACGTTCTGCAGTAGAGGGGAGCGGAGCATCTCCGTTA---TCGG -180 -170 -160 -150 -140 sub C-TGAAGTTGGGAGAGCAGAAGTCTGC---TTTTC-AAACAGAGTGGAACCGCGCGGTTA hal A-TTGAGAGGGGAAATGGCAAATCGACCATTTCTC-AAGCAGAGTGGGACCACGTGA--A ste AATCGAGTGAGCGAAACGGCGCCCCGT---TTCGCTAAACAGAGTGGAACCGCGCCA--A -130 -120 -110 -100 -90 ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub AAGCGTCTCTGTCATGTTTACATGCAGAGACGCTTTTTTTATTG--GGTAGAGGAAATCA hal GAGCGTCTCTGTGCAAGCAGCA--CAGGGACGCTCTTTTTCATGTCGTTCGTTGCAGATA ste AAGCGTCTCTGTGTCTGCGGCA--CAGGGACGCTTTTTT.......GTTATCGGAATCGA -80 -70 -60 -50 -40 -30 sub GATAGA-GAAACGGGGGGAAGCAT hal GATGGATGAGTCTGAGGGGAGGA. ste GTGAGC-GAAACGGCG........ -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...