Similar regions between promoters of degS

<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GCTTAAATGACAGATAAA-ACGCGATTTTTCTATAACAATCTCGTGTTCTCCCGCTTCTT hal ....AAATGAGAAAAAAAGAAGGGAATTTTTT............................ ste .........ATACAAAAA-ACGCGATTTTTCGATCACGATCTCGCGTTCGCCGTATCCTT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<< sub TCACAGTAAAATAGCTGTGCAGCATGCTAGCTGACCCTCCTGCTAAGCATAAAAGACTGC hal ..........................................................GC ste TGACCGTGTAATATGTTTGCAACA---AAGCAAAACACCTCAACATACAAAAAACGCGAA -240 -230 -220 -210 -200 -190 sub --CTATACAAATTCGTACAGTCTTTAGAATTTTTGTGC-GTATTTTGGTATCATAAAGAG hal --TTAGGCAAATTCGT...........................TTTGATAGTGTAAATAG ste AACGGTTTAATTTTGTTCATTTTTTTGCATGAATGGCTAGCGCTCTACTCTAATTATG-G -180 -170 -160 -150 -140 -130 sub TAGATAGTATATAAAAATGTTTTTTTCTAGAATATACGCATTCTTTCATTATAATTCGAC hal ACTATACTATCT.......................AAGGATTCATTTATAAAAATGAGAA ste TAAACTGAAAATAAAAGAGCAATAGA-TAGGGCATGC---TTTTATTATTATAAATCGAC -120 -110 -100 -90 -80 -70 sub ATAATTTGCAGATCAATTACATTTATAATAAAAATATATGACAACGCCGTGACGGAGGGA hal AAAA........TCATTTATAAAAATGAGAAAAAAAGAAGGGAA................ ste AACTTTTTTCCTTCAAACAAATTT.................................... -60 -50 -40 -30 -20 -10 sub AATT hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...