Similar regions between promoters of ecsA

sub CTAACGATTCCTGCGATAAACACCTCATTTGACAATTTGCTTCATACATGAAGAATTCAT hal .TAGCGAATACTGCGAT.........ATGTGACATTCTATAAAAAAGAAAAAGAAGTAGT ste ..AACGGTGTCTTTGACGAACACCCCATTT.................ATGGATCGTTCAT -300 -290 -280 -270 -260 -250 sub CAATTCAGTGAAGAGAAATGGTTTGAGCATTGGACATGTTTATTTTCTATC-CAACTGTT hal CAACGAAAGGAAG-GATTTGGTACGATGAT......TGTCTTTTTTCTTTCTCAACATTA ste CAACTTTTTGA................................................. -240 -230 -220 -210 -200 -190 sub TCTAAGACGTCTTTGACAAACACCTCATTTTTCAGTTGATATGCTTTTCCTCTACAACTT hal GCAATGA..................................................... ste ........GTCTTTGACGAACACCCCATTT..................CGTTTACAACGT -180 -170 -160 -150 -140 -130 sub TTATGATGTCCAGAACCCTGTCTCTTTATGACAGCAAATTCATCATTTGTTAAAAGGGAA hal ............................................................ ste TT-TGCGGCTCACAACGGTGTCTTTGACGAACACCCCATTCTTCCTTTGTTCAACGTGA. -120 -110 -100 -90 -80 -70 sub TTGTTTCAAATCAGGCCTTGTTTTTGGTACTATGAAGAAAAACACTATAAGGGGAGAAAC hal ......................TTTGGTACGATGA.GATGAACAGTATAAAG........ ste TTTTTGGTAAGCGAGGCTATAGTTTGGTACAATGGGGACAAAGGCCAGAACGGAA..... -60 -50 -40 -30 -20 -10 sub T hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...