Similar regions between promoters of flgB

sub AGTCTTTCTATGTAATAATTTTAATAAATTTTGCATTTTTCTTCAAAAAGTTTCAAAAAT hal .............AATCCTTTCCTGAAATTCCTGAGTTATGTCGAATTATTTCTAAAAAG ste .............................................AAAACTAGCAGAAAT -300 -290 -280 -270 -260 -250 sub GCCGAAAAGAAAGGAGAAAAAACAGAAATTCTGCTATTTTCAGGCTTATATCAGGGCGAG hal CACGATGAAATAGG.....ATACAAACTTCCTACTGTTTTCGGATATATA.......... ste TGTCGAAAAATAGGAGAAAAGA...................................... -240 -230 -220 -210 -200 -190 sub AAATGTAGTTCTAACAATCTAGGACTTTATACCTAGTTGCAAAATAG-ATAATTGTGAGG hal .....TATTTCTAAAAAGC-ACGATGAAATAGGGACTTTTTATATAGTATAATTG..... ste ......................................GTACATTAA-AGTATTGA-ACG -180 -170 -160 -150 -140 -130 sub ACATTTTTTTACACGAACTTCATAGACTTTATGCCTGTTATTTCTTACAATAAGCATATA hal .....TATTGATACAAACTTCCTACTGTTT.............................. ste ACAAGTTTTTAAGCGAACTTGAAAAATT................................ -120 -110 -100 -90 -80 -70 sub GTTTTACAATTCTCGACAAGGATATTGAGGGTGAAAAAAACTGAAATGGAGGTAAGTGGA hal ............................................................ ste ...................................AAAAATTGAAATCGAGCTGAACGG. -60 -50 -40 -30 -20 -10 sub T hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...