Similar regions between promoters of gltT

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]] sub AATGACTGTATAAAAGTAAACGATTTGTAATGAGCGAAAATCCCGCGCCTTACGCGTGGG hal ............................................................ ste ......TTTTTAAAAGTAAAATAATTTT................................ -300 -290 -280 -270 -260 -250 ] sub ATTTTCTTATTTTTTCACATATCTCTTAATTTTGAAATAATAGTCAGGTTAGGTCAAAGC hal ..TGTCATAATATCTAACAAGCCTCTTTATTTATTAATAA.................... ste ............................................................ -240 -230 -220 -210 -200 -190 sub TCACCTGTTTTTAGATAATTCTGGTGATTATCATAATGTCATTGAATATTCTTTATTTTC hal ............................TGTCATAATATCTAACAAGCCTCTTTATTTAT ste ............................................................ -180 -170 -160 -150 -140 -130 sub GAA-ATATAATT-TACTATAGACGAATTGATTTCTTATCTATTATAATTTGATCTAATAG hal TAATAAATAAAGATAAAATGTAACATGTGTTATCATATTTATTGCA--TTAATACAGTAG ste ..A-ATAGAAAT-TATTTTA-AAAAACTGAATTCTT-TCATTTAT............... -120 -110 -100 -90 -80 -70 sub TGAGATTAAATATATGTCTATTCATGATATATGTTGATACTTTGTTTTTTGGGAGGTAAT hal TGAGATAAAATGTAACATGTGTTATCATATTTATTG........................ ste .......................ATCAAAAATATTGACAGATTTTATTTTTAAAAGTAA. -60 -50 -40 -30 -20 -10 sub CT hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...