Similar regions between promoters of lcfA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GACTCCGCGGTTTAAAATTGATCAGGAAATCGAAAATGATAACCGGGCTGTCGGCTTTAT hal .........GTTTAAACAGATAAATGAAACTGAAAAAGAAAGGTGCGGAGTGCAGCATCT ste GACTCCGTTCTTTTTTTTTGATGAAAAATTAGAAAAAGTAAA.................. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTCATTTGTCATTTCTGTCGGGCTTTCTTTTGTGGTGGCAGCCGGAATATAAGGGGACGG hal TTCTTTT..................................................... ste ..................................................AAGATGAGGG -240 -230 -220 -210 -200 -190 sub AGAATAGATGGAAAA-GCTTGCGAAAATACTGCTCGCCGCAGCGGGAATCTTTTTGTTAA hal ............................................................ ste ATGAGAGTCCGAAAGCGCTTACGATATTAATTC........................... -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub TTGGTCTTATATATCTGTTCATATTATGAGAAAAAGAAAGATTTACCTTTCTTTTTCTTT hal .............................GAAAAAGAAAGGTGCGGAGTGCAGCATCTTT ste .........................ATTAGAAAAAGTAAAAT...CCGTTCTTTTTTTTT -120 -110 -100 -90 -80 -70 sub TTTTTGCCGTCCATCTGCTATAATGATAAGGTGGATCTCTAAAATCGAAAGGGGAGGTTT hal CTTTTTC...CCAGCTGCTCTAAGCATA..........CTGAAAAAGAAAGGTGCGG... ste ............................................................ -60 -50 -40 -30 -20 -10 sub T hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...