Similar regions between promoters of lysA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGTCATCGGATTTACAGTGCTAATTATGCCATGGCAAGCATCAAATCCCTTCAGACACCG hal ............................................................ ste .......................TTTTGCCATG........................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TACTTATGGCCGCTGATTCCCTTTAACGGAAAGGCGCTGTGGCAGGTTCTTGTCCGCACA hal ..............GTTTACCTATAAGGGAGAG........................... ste .......GGCCGCTTTTTTCGTTTTA-------GCGCTATTGCAACTTTTT......... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCGAAACCTGGCGCAAAAGTAAGACCCAGCATCGTTCACCCCAAAAATCGCTTAAGGCAG hal .......................ACCTTGCAGCATTCAAC.................... ste ........................................................GCGG -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>> sub CCTACCAATTCATAATCGCATTGAAACTGACTGAAGAGTATGATAATGTATGTCTTAATT hal .......AATAAAAAACGAACTGCCGCTGACTG...........AATGTATGTCTTTTTT ste CCTTCCGTTTCA.......ATTGCAACTTTTTTATAATTATGATAAGTTATAT-TTAATT -120 -110 -100 -90 -80 -70 sub ATGAAGGGA-CAGTCCATAAAACTGTCCTTTCATCCATAAGCG-GAGAAAGAGGGAATGA hal ACGATGGTTGCAGTCGGTTAAAACGTC..TTTACCTATAAGGGAGAGAAA.......... ste ...................AAACTGTCTTTT............................. -60 -50 -40 -30 -20 -10 sub CA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...