Similar regions between promoters of mreBH

<<<<<<<<<<<<<<<<< sub ACACCTATTGATTTCATAAAAACCCTTCTTCCTTTAAATGTTTCTTTTCTCATGTAATGT hal ..................................................CATGTCCTGT ste ...........TGTCATATTAAGTCCGCTTAATAGACAGGGGGTTTTTATTATGCAA... -300 -290 -280 -270 -260 -250 sub TTTAAGGATGTACCTCAATATATCGTAGACGAATG-----AAACTTTGAAAAAGTTTCCC hal TTTGAGACATTTCTTTAATGTATGTTACAAG............................. ste ...............CTATATTTCATAGGGGATCGGGGGAATACTTGGAAAACGTTACGC -240 -230 -220 -210 -200 -190 sub GCTTTCTATAAGAATTACAAGATATTTTTTCCATAAAACCGAAAAATGTATTACTTCTGT hal ....................GGTACATTTTTCTTCAATTCTAAGAAACATGTCCTGTTTT ste TATT.................ATTTTTTATACATGAGATCAAAAAATTTTT.....CTAT -180 -170 -160 -150 -140 -130 sub TACACAGTTCCTTGATTTTT--TACAAAAACATTTCTTTACCGACGCACACCCCCAAAAA hal GAGACATTTCTTTAATGTATGTTACAAAGACATTTCTTTA.........AACCCTTGAAA ste TATTCATTTCCTCCCTTTT......................................... -120 -110 -100 -90 -80 -70 sub TCGCAGTATTTCT-GAGAAACTTTAAATGTAGAATCATATTAAATTAGG---ATAGAGAT hal TGGAAGTCTTTTTTGAAATACTTT.................................... ste ..................................TCATATTAAGTCCGCTTAATAGACAG -60 -50 -40 -30 -20 sub TGGGTGAAAAC hal ........... ste GGGGT...... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...