Similar regions between promoters of msmX
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGCTGTTTATTGAAAACAACTCAAACGTCACATTAACAGCGAAAAAGCTGCATCTGCAT hal .............AACATAATTTAAACATCACATCTGCAGCCCGATCCCTTCATTTGCAC ste .....GTTTTTGCAATGCAACTTAAACGTCTCGATGGCAGCGAAAAAGCTGTATATGCAC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGCAACAGCCTGCAATATCGGATTGATAAATTTATTGAGCGGTCAGGGATAGATATCAAA hal CGCAACAGCTTGCAATACAGGGTCGACAAGTTTATTGAAAAAACAGGGATTGACAT.... ste CGCAATAGTTTGCAATATCGAATCGATAAATGGGCGGAGCAAACTGGTGTTGACATCAAA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCGTACAAAGGCGCGCTTCTTGCCTATTTTATCTGCCTGCAAAATGAAAGTTCAGAATAA hal ............GTGCATGTTGTCCATTTTCT............................ ste CGGTTCAAAGGGGCGGCAGCCGTCTATTTGGCTATCTTGCACCGGCGCCGTTCGTAATCC -180 -170 -160 -150 -140 -130 sub A-------TTGGAAATATGCACGAAAAATGGCTGGGTGATTTTATGAACGCTGCCCATTT hal ............AAACATGCACAAA...............TTTGTGCATGTTGTCCATTT ste CCCGCTTTTTTGTCATGTCGCCGAAAATCGGCGGCATT-TTTTGTGCACCTCGTCCATTT -120 -110 -100 -90 -80 -70 @@@@@@@@@@@@@@@@@@@@@@@ sub TAGCGAGAGGGAATTGCTGT-TACACTCAATATAAGAAAGCGTTTACAATAACAAAGGGG hal T................................AATAAAACGCTTTCATAAACA...... ste ACGAATGTTCCTATTTTTCTATACACTAATGGCAAGAAAACGATTTC............. -60 -50 -40 -30 -20 -10 sub GATGTTAG hal ........ ste ........ -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...