Similar regions between promoters of mta
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GGAAATAATTTGCAGTACGCCTGGCACGGCACCGATTAGAAAAAAGAACGCGCCTGAAAG hal ............................................................ ste .......................GAAAGGCATCGCTTTTAACAAA............... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CGCGGTAATTGCGCCCATAATAATAAATAAAATGCCTGTAGCTTTTCCCCATTTCGAAAT hal ......................ATGATTGAAATCCCTGT......TCCCCCATCCGAAGT ste ..............CGATTGTGATAACGAAGATGCC........................ -240 -230 -220 -210 -200 -190 <<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GCT-GATGAGGGTTTTGTTCATTGTTTCAGGATTCATGTATACTGGCTCCCCTTTACAAA hal TTGAGATGGGGGTTTCTTTTATGCTTTGA............................... ste ......TGAGCCCTTTTTTCTTTTTTCC................................ -180 -170 -160 -150 -140 -130 sub AAAATACTCACTTTTCTTTTATACACTATTTGTGAGAAGTTTTGTATATAGAAAATAACA hal ............TTTCTTTTATGC.................................... ste ...........TTTTCTTTTTTCCTCTTT...............TATAGAGAAAA...CT -120 -110 -100 -90 -80 -70 @@@@@@@@@@@@@@@@@@@@@@@ sub TTTTGGGGATTGACCCTAACGTTGCGTGATTGTTTACGATAAAAAAGAGG-AGGTGTTAT hal .........TTGACTCTCACGTTACGTGATGATTTATGATGCAAGAAGGA-AGGAG.... ste TTTTTCCTCTTTACTTTTACGTTGCGTCAAGGTGTATCGTCATGAATAGGGAGGTG.... -60 -50 -40 -30 -20 -10 sub GT hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...